Software Packages:
Shannon, J,
R.E. Blake, T. Whiteaker.
ingestr: An R package for reading environmental data from raw formats into dataframes.
Marchand, P, I. Carroll, M. Smorul, R. E. Blake, Q. Read.
rslurm: submit R code to a Slurm cluster. Artist: S. Cho.
Data Packages:
Blake, R.E., J.A. Olin. 2020. Code and data "Effects of multiple stressors were mixed in an experimental plant – herbivore system". Knowledge Network for Biocomplexity. doi:
https://doi.org/10.5063/F10V8B41
Blake, R.E., C.L. Ward, M.E. Hunsicker, A.O. Shelton, A.B. Hollowed. 2019. Code and data for biodiversity, spatial community structure, and spatial community composition of groundfish in the Gulf of Alaska. doi:
https://doi.org/10.5063/F1V40SJ8
Peer-Reviewed Articles:
Mally, R., R.M. Turner, R.E. Blake, G. Fenn-Moltu, C. Bertelsmeier, E.G. Brockerhoff, R.J.B. Hoare, H.F. Nahrung, A. Roques, D.S. Pureswaran, T. Yamanaka, A.M. Liebhold. In Review. Global Lepidoptera invasions patterns.
Halpern, B. et al. (including R.E. Blake) In Review. Priorities for synthesis in ecology and environmental science. Frontiers in Ecology and the Environment.
Blake, R.E., J. Olin. In Revision. Effects of multiple stressors were mixed in an experimental plant-herbivore system.
Nagy, R. C., et al. (including R.E. Blake). 2021. Harnessing the NEON Data Revolution to Advance Open Environmental Science with a Diverse and Data-Capable Community. Ecosphere. DOI: http://doi.org/10.1002/ecs2.3833
Kitzes, J., R.E. Blake, S. Bombaci, M. Chapman, S. M. Duran, T. Huang, M. B. Joseph, S. Lapp, S. Marconi, W.K. Oestreich, T.A. Rhinehart, A.K. Schweiger, Y. Song, T. Surasinghe, D. Yang, K. Yule. 2021. Expanding NEON biodiversity surveys with new instrumentation and machine learning approaches. Ecosphere. DOI: https://doi.org/10.1002/ecs2.3795
Liebhold, A.M., R.M. Turner, R.E. Blake, C. Bertelsmeier, E.G. Brockerhoff, H.F. Nahrung, D.S. Pureswaran, A. Roques, H. Seebens, T. Yamanaka. 2021. Invasion disharmony in the global biogeography of native and non-native beetle species. Diversity and Distributions 27:11:2050-2062. DOI: https://doi.org/10.1111/ddi.13381
Turner, R.M., E.G. Brockerhoff, C. Bertelsmeier, R.E.Blake, B. Caton, A. James, A. MacLeod, H.F. Nahrung, S.M Pawson, M.J. Plank, D.S. Pureswaran, H. Seebens, T. Yamanaka, A.M. Liebhold. 2021. Worldwide border interceptions provide a window into human-mediated global insect movement. Ecological Applications. 31:7 DOI: https://doi.org/10.1002/eap.2412
Ordway, E.M., A.J. Elmore, S. Kolstoe, J.E. Quinn, R. Swanwick, M. Cattau, D. Taillie, S.M. Guinn, K.D. Chadwick, J.W. Atkins, R.E. Blake, M. Chapman, K. Cobourn, T. Goulden, M.R. Helmus, K. Hondula, C. Hritz, J. Jensen, J.P. Julian, Y. Kuwayama, V Lulla, D. O’Leary, D. R. Nelson, J.P. Ocon, S. Pau, G.E. Ponce-Campos, C. Portillo-Quintero, N.G. Pricope, R.G. Rivero, L Schneider, M. Steele, M.G. Tulbure, M.A. Williamson, C. Wilson. 2021. Leveraging the NEON Airborne Observation Platform for socio-environmental systems research. Ecosphere. 12:6 DOI: https://doi.org/10.1002/ecs2.3640
Blake, R.E., C.L. Ward, M.E. Hunsicker, A.O. Shelton, A.B. Hollowed. 2019. Spatial community structure of groundfish is conserved across the Gulf of Alaska. Marine Ecology Progress Series. DOI:
https://doi.org/10.3354/meps13050
Couture, J. L.,
R. E. Blake, G. McDonald, C. Ward. 2018. Funder imposed data publication requirements seldom inspire data sharing. PLOSOne. DOI:
10.1371/journal.pone.0199789
Shelton, A. O., M. E. Hunsicker, E. J. Ward, B. E. Feist, R. E. Blake, C. L. Ward, B. Williams, J. T. Duffy-Anderson, A. B. Hollowed, A. C. Haynie. 2018. Spatio-temporal models reveal subtle changes to demersal communities following the Exxon Valdez oil spill. ICES Journal of Marine Science. DOI: 10.1093/icesjms/fsx079
Zador, S. G. , S. K. Gaichas, S. Kasperski, C. L. Ward,
R. E. Blake, N.C. Ban, A. Himes-Cornell, Z. Koehn. 2017. Linking ecosystem processes to communities of practice through commercially fished species in the Gulf of Alaska.
ICES Journal of Marine Science.
DOI: 10.1093/icesjms/fsx054
Blake, R.E., J.E. Duffy. 2016. Influence of environmental stressors and grazer immigration on ecosystem properties of an experimental eelgrass community.
Journal of Experimental Marine Biology & Ecology. 480: 45-53. DOI: 10.1016/j.jembe.2016.03.007
Blake, R.E., J.E. Duffy, J. Paul Richardson. 2014. Patterns of seagrass community response to local shoreline development. Estuaries & Coasts. 37: 1549-1561. DOI: 10.1007/s12237-014-9784-7
Blake, R.E., J.E. Duffy. 2012. Changes in biodiversity and environmental stressors influence community structure of an experimental eelgrass (Zostera marina) system.
Marine Ecology Progress Series. 470, 41-54. DOI: 10.3354/meps10006
Blake, R.E., J.E. Duffy. 2010. Grazer diversity affects resistance to multiple stressors in an experimental seagrass ecosystem.
Oikos. 119, 1625-1635. DOI: 10.1111/j.1600-0706.2010.18419.x
Grosholz, E.,
R.E. Blake. 2010. The Effects of Grazing Geese on Hybrid and Native Spartina in San Francisco Bay. In: Ayres, D.R., D.W. Kerr, S.D. Ericson and P.R. Olofson, eds. 2010.
Proceedings of the Third International Conference on Invasive Spartina, 2004 Nov 8-10, San Francisco, CA, USA. San Francisco Estuary Invasive Spartina Project of the California State Coastal Conservancy: Oakland, CA. 191-196.
Neira, C., E. Grosholz, L. Levin,
R.E. Blake. 2006. Mechanisms Generating Modification of Benthos Following Tidal Flat Invasion by a Spartina Hybrid.
Ecological Applications. 16(4), 1391-1404. DOI: 10.1890/1051-0761(2006)016[1391:MGMOBF]2.0.CO;2
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